PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G050300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARF
Protein Properties Length: 736aa    MW: 81133.8 Da    PI: 7.2339
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G050300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.62.7e-24154255199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae++       +  ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F 
  Manes.17G050300.1.p 154 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyaQ--QRPSQELVAKDLHGFQWRFRHIYRGQPRRHLLTTGWSAFVNKKKLLSGDAVLFL 241
                          99****************************9743..345679************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++el+++++r+
  Manes.17G050300.1.p 242 --RGDDGELRLGIRRA 255
                          ..3489999****996 PP

2Auxin_resp122.62.8e-40281361282
           Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                          ++a+st+svF+++YnPr+s+seF+++++k++k+l++++s+GmRfkm+feted++err++G+++g+sd+dp rWp SkWr+L
  Manes.17G050300.1.p 281 VNAMSTRSVFNIYYNPRSSSSEFIIPLHKFLKSLDHSFSIGMRFKMRFETEDAAERRYTGIITGISDIDPARWPSSKWRCL 361
                          689*****************************************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-41147256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-39148257IPR015300DNA-binding pseudobarrel domain
CDDcd100172.85E-22152254No hitNo description
SMARTSM010192.7E-22154256IPR003340B3 DNA binding domain
PfamPF023623.1E-22154255IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239154256IPR003340B3 DNA binding domain
PfamPF065072.1E-35281361IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MVGIIDLNTT EEDETTPSSG SLSSPSSSSA SALSASNSSP PGSSSVCLEL WHACAGPLIS  60
LPKKGSVVVY FPQGHLEQLP DLPLAAYDLP SHIFCRVVDV KLHAEASNDD VYAQVSLAPE  120
SEQIEQMLKK GKNEGDGEEE DMEAAVKSTT PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF  180
PPLDYAQQRP SQELVAKDLH GFQWRFRHIY RGQPRRHLLT TGWSAFVNKK KLLSGDAVLF  240
LRGDDGELRL GIRRAAQVKC GATLPALCSQ QLNHSTFTDI VNAMSTRSVF NIYYNPRSSS  300
SEFIIPLHKF LKSLDHSFSI GMRFKMRFET EDAAERRYTG IITGISDIDP ARWPSSKWRC  360
LLVRWDDTET SRHSRVSPWE IEPSGPLSSS TSFMAPVLKR SRSGLPSLKP EFPVPDGIGV  420
SDFGESSRFQ KVLQGQEILS FNTLYDGVDQ NRRPSETRRC FPSTVNAGLA KTRNGDRGPV  480
VNSDVSRESI GFCESFRFHK VLQGQEIIPS SSFGRASTTA TEVCENGCFG ISNGEQVTRS  540
RNGWSAMMQG YNTHMRPSTQ VPSPSSVLMF QQASNHVSYQ SPAYNFSEQK EQGASIQGWF  600
HNAETCGEKR LSSHSERIIG RNDRWGSSSF GISHNHIQHC ISPLVAQSTF KDGQDIVASC  660
KSSCRLFGFQ LTEDRHVANK DDDGPITMTS LNPGSSFLPR AAEQFHLKPP AITNAVGSNC  720
TKGILQQHPE NYHIY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-117333901361Auxin response factor 1
4ldy_B1e-117333901361Auxin response factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002522498.20.0PREDICTED: auxin response factor 3
SwissprotO236610.0ARFC_ARATH; Auxin response factor 3
TrEMBLB9S9290.0B9S929_RICCO; Auxin response factor
STRINGPOPTR_0011s05830.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45763355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.10.0ARF family protein